hky_site_model_to_xml_state

Converts a site model to XML,
 used in the <code>state</code> section

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

hky_site_model_to_xml_state function

<dl><dt>site_model</dt>
<dd>a site model,
as returned by <code>create_site_model</code></dd>
<dt>beauti_options</dt>
<dd>one BEAUti options object,
as returned by <code>create_beauti_options</code></dd></dl>

Arguments

Author

Converts a site model to XML,
  used in the state section — hky_site_model_to_xml_state

<dl>

<dt>site_model</dt>
<dd>a site model,
as returned by <code>create_site_model</code></dd>


<dt>beauti_options</dt>
<dd>one BEAUti options object,
as returned by <code>create_beauti_options</code></dd>

</dl>

Converts a site model to XML,
 used in the <code>state</code> section

hky_site_model_to_xml_state: Converts a site model to XML, used in the `state` section

Description

Usage

Value

Arguments

Author