init_clock_models

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richèl J.C. Bilderbeek

beautier

'BEAUti' from R

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Pedro Taucce

Olivier Roy

Jana Riederer

init_clock_models function

<dl><dt>fasta_filenames</dt>
<dd>One or more FASTA filenames.
Use <code>get_fasta_filename</code> to obtain a testing FASTA filename.</dd>
<dt>clock_models</dt>
<dd>a list of one or more clock models,
as returned by <code>create_clock_model</code></dd>
<dt>distr_id</dt>
<dd>the first distributions' ID</dd>
<dt>param_id</dt>
<dd>the first parameter's ID</dd></dl>

Arguments

Author

Initializes all clock models — init_clock_models

<dl>

<dt>fasta_filenames</dt>
<dd>One or more FASTA filenames.
Use <code>get_fasta_filename</code> to obtain a testing FASTA filename.</dd>


<dt>clock_models</dt>
<dd>a list of one or more clock models,
as returned by <code>create_clock_model</code></dd>


<dt>distr_id</dt>
<dd>the first distributions' ID</dd>


<dt>param_id</dt>
<dd>the first parameter's ID</dd>

</dl>

Initializes all clock models

init_clock_models: Initializes all clock models

Description

Usage

Value

Arguments

Author