cbs_tree_prior_to_xml_prior_distr

Creates the tree prior section in the prior section of
the prior section of the distribution section
of a BEAST2 XML parameter file for a Birth-Death tree prior

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

beautier

'BEAUti' from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Jana Riederer

cbs_tree_prior_to_xml_prior_distr function

<dl><dt>cbs_tree_prior</dt>
<dd>a Coalescent Bayesian Skyline tree prior,
as returned by <code>create_cbs_tree_prior</code></dd></dl>

Arguments

Author

Creates the tree prior section in the prior section of
the prior section of the distribution section
of a BEAST2 XML parameter file for a Birth-Death tree prior — cbs_tree_prior_to_xml_prior_distr

<dl>

<dt>cbs_tree_prior</dt>
<dd>a Coalescent Bayesian Skyline tree prior,
as returned by <code>create_cbs_tree_prior</code></dd>

</dl>

Creates the tree prior section in the prior section of
the prior section of the distribution section
of a BEAST2 XML parameter file for a Birth-Death tree prior

cbs_tree_prior_to_xml_prior_distr: Creates the tree prior section in the prior section of the prior section of the distribution section of a BEAST2 XML parameter file for a Birth-Death tree prior

Description

Usage

Arguments

Author

Examples