check_mrca_prior_taxa_names

Will <a href="/link/stop?package=beautier&version=2.6.5" data-mini-rdoc="beautier::stop">stop</a> if not.

'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAUti 2' (which is part of 'BEAST2') is a GUI tool
that allows users to specify the many possible setups
and generates the XML file 'BEAST2' needs to run.
This package provides a way to create 'BEAST2' input
files without active user input, but using
R function calls instead.

Richel Bilderbeek

beautier

'BEAUti' from R

Richèl J.C. Bilderbeek

Joëlle Barido-Sottani

David Winter

Paul Van Els

Raphael Scherrer

Yacine B. Chehida

Katharine S. Walter

Gary Napier

Jason Griffiths

Thijs Janzen

Jana Riederer

check_mrca_prior_taxa_names function

<dl><dt>taxa_names</dt>
<dd>names of the taxa,
as returned by <code>get_taxa_names</code>.
Keep at <code>NA</code> to have it initialized automatically,
using all taxa in the alignment</dd></dl>

Arguments

Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> if not.

Check the MRCA prior's taxon names are valid. — check_mrca_prior_taxa_names

<dl>

<dt>taxa_names</dt>
<dd>names of the taxa,
as returned by <code>get_taxa_names</code>.
Keep at <code>NA</code> to have it initialized automatically,
using all taxa in the alignment</dd>

</dl>

check_mrca_prior_taxa_names: Check the MRCA prior's taxon names are valid.

Description

Usage

Arguments