bedr (version 1.0.2)

bed2vcf: convert bed to vcf

Description

convert bed to vcf

Usage

bed2vcf(x, filename = NULL, zero.based = TRUE, header = NULL, fasta = NULL)

Arguments

x

the input bed object

filename

a filename to write to.

zero.based

is the file zero based i.e. bed format. defaults to true.

header

a list of things to put in the header. repeated elements such as INFO, FILTER, FORMAT can be put in data.frames.

fasta

build of the genome in fasta format

Examples

# bed2vcf(x)