bedr (version 1.0.2)

is.merged.region: checks if region file is merged

Description

checks if region file is merged

Usage

is.merged.region(
	x,
	check.zero.based = TRUE,
	check.chr = TRUE,
	check.valid = TRUE,
	check.sort = TRUE,
	verbose = FALSE
	)

Arguments

x

region or index

check.zero.based

should 0 based coordinates be checked

check.chr

should chr prefix be checked

check.valid

check if region is valid

check.sort

check if region is sorted

verbose

more words

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();

a <- index[[1]];

b <- is.merged.region(a);

}