bedr (version 1.0.2)

vcf2bed: convert a vcf to a bed file

Description

Convert a vcf to a bed file. Currently, it needs to read into R via read.vcf

Usage

vcf2bed(x, filename = NULL, other = NULL, verbose = TRUE)

Arguments

x

a vcf object

filename

the name of file if you want it exported

other

fields to include apart from chr, start, end.

verbose

more words

Value

A bed styled R object or an external file

Examples

clinVar.vcf.example <- system.file("extdata/clinvar_dbSNP138_example.vcf.gz", package = "bedr")
x <- read.vcf(clinVar.vcf.example)
x.bed <- vcf2bed(x)