bedr (version 1.0.7)

bedr.setup: Initialize some config settings for bedr

Description

Initialize some config settings for bedr. This includes downloading useful datasets if requested.

Usage

bedr.setup(datasets = "all", data.dir = paste0(Sys.getenv("HOME"), "/bedr/data"))

Arguments

datasets

A list of datasets to download. Defaults to "all" i.e. c("refgene","hg19","b37","hugo", "cosmic","clinvar")

data.dir

A directory to put the data. Defaults to ~/bedr/data

Author

Daryl Waggott

Details

The default config file is at ~/bedr/config.yml. It's in yaml format.

Examples

if (FALSE) {
  bedr.setup()
  }