check.binary

a string referring to a binary/executable i.e. bedtools, bedops, tabix

verbose

check if a binary is in the path. Specifically used for bedtools, bedops and tabix.

 binary

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'.
These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging.
bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

Paul C. Boutros

bedr

Genomic Region Processing using Tools Such as 'BEDTools',
'BEDOPS' and 'Tabix'

Syed Haider

Daryl Waggott

Emilie Lalonde

Clement Fung

check.binary function

<dl> <dt>x</dt>
<dd>a string referring to a binary/executable i.e. bedtools, bedops, tabix</dd> <dt>verbose</dt>
<dd>print log</dd></dl>

Arguments

Author

checks if binary is in the path — check.binary

<dl>

 <dt>x</dt>
<dd>a string referring to a binary/executable i.e. bedtools, bedops, tabix</dd>

 <dt>verbose</dt>
<dd>print log</dd>

</dl>

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check.binary: checks if binary is in the path

Description

Usage

Value

Arguments

Author

Details

Examples