bedr (version 1.0.7)

is.merged.region: checks if region file is merged

Description

checks if region file is merged

Usage

is.merged.region(
	x,
	check.zero.based = TRUE,
	check.chr = TRUE,
	check.valid = TRUE,
	check.sort = TRUE,
	verbose = FALSE
	)

Arguments

x

region or index

check.zero.based

should 0 based coordinates be checked

check.chr

should chr prefix be checked

check.valid

check if region is valid

check.sort

check if region is sorted

verbose

more words

Author

Daryl Waggott

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();

a <- index[[1]];

b <- is.merged.region(a);

}