bedr (version 1.1.3)

size.region: Get region size

Description

Get region size

Usage

size.region(
	x, 
	zero.based = TRUE, 
	check.zero.based = TRUE, 
	check.chr = TRUE, 
	check.valid = TRUE, 
	verbose = TRUE
	)

Value

size/length of the region

Arguments

x

region in vector, matrix or dataframe format

zero.based

whether the coordinates are zero-based or 1

check.zero.based

should 0 based coordinates be checked

check.chr

should chr prefix be checked

check.valid

should the region be checked for integerity

verbose

messages and checks

Author

Daryl Waggott

See Also

convert2bed

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();

a <- index[[1]];

a.sizes <- bedr:::size.region(a);
}