bedr (version 1.1.3)

write.vcf: write a vcf object

Description

write a vcf object

Usage

write.vcf(x, filename = NULL, verbose = TRUE)

Value

A vcf file

Arguments

x

a vcf object

filename

a filename

verbose

more words

Author

Daryl Waggott

Details

The input needs to be a vcf object. This

References

vcf format specifications

Examples

vcf  <- read.vcf(system.file("extdata/clinvar_dbSNP138_example.vcf.gz", package = "bedr"));
vcf$header <- c(vcf$header, NOTE="vcf processed by bedr")

if (FALSE) {
  write.vcf(vcf, filename = paste(tempdir(), "/bedr.example.vcf", sep = ""));
  }