.addLegendAutosomalTrisomy.bexy

Function to create a legend for autosomal trisomy

internal

Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (<https://bitbucket.org/wegmannlab/bexy>), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.

Madleina Caduff

bexy

Visualize and Parse the Output of 'BeXY'

Raphael Eckel

Christoph Leuenberger

Daniel Wegmann

.addLegendAutosomalTrisomy.bexy function

<dl><dt>x_coord</dt>
<dd>The x-coordinate for legend.</dd>
<dt>y_coord</dt>
<dd>The y-coordinate for legend.</dd>
<dt>scaffoldName</dt>
<dd>The name of the scaffold to plot (has to be an autosome).</dd>
<dt>colors</dt>
<dd>A vector of length two with the colors for triploid and diploid samples, respectively.</dd></dl>

Arguments

Function to create a legend for autosomal trisomy — .addLegendAutosomalTrisomy.bexy

<dl>

<dt>x_coord</dt>
<dd>The x-coordinate for legend.</dd>


<dt>y_coord</dt>
<dd>The y-coordinate for legend.</dd>


<dt>scaffoldName</dt>
<dd>The name of the scaffold to plot (has to be an autosome).</dd>


<dt>colors</dt>
<dd>A vector of length two with the colors for triploid and diploid samples, respectively.</dd>

</dl>

.addLegendAutosomalTrisomy.bexy: Function to create a legend for autosomal trisomy

Description

Usage

Value

Arguments