.getIndexScaffold.bexy

Function that returns the index of a given scaffold

internal

Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (<https://bitbucket.org/wegmannlab/bexy>), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.

Madleina Caduff

bexy

Visualize and Parse the Output of 'BeXY'

Raphael Eckel

Christoph Leuenberger

Daniel Wegmann

.getIndexScaffold.bexy function

<dl><dt>object</dt>
<dd>A bexy object.</dd>
<dt>scaffoldName</dt>
<dd>A string representing the name of a scaffold.</dd>
<dt>takeIfNotFound</dt>
<dd>A string ("X-linked" or "Y-linked") that denotes the type of scaffold to use if scaffoldName could not be found</dd></dl>

Arguments

Function that returns the index of a given scaffold — .getIndexScaffold.bexy

<dl>

<dt>object</dt>
<dd>A bexy object.</dd>


<dt>scaffoldName</dt>
<dd>A string representing the name of a scaffold.</dd>


<dt>takeIfNotFound</dt>
<dd>A string ("X-linked" or "Y-linked") that denotes the type of scaffold to use if scaffoldName could not be found</dd>

</dl>

.getIndexScaffold.bexy: Function that returns the index of a given scaffold

Description

Usage

Value

Arguments