.getSamplesToHighlightAutosomalTrisomy.bexy

Function to select samples that should be highlighted for autosomal trisomy

internal

Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (<https://bitbucket.org/wegmannlab/bexy>), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.

Madleina Caduff

bexy

Visualize and Parse the Output of 'BeXY'

Raphael Eckel

Christoph Leuenberger

Daniel Wegmann

.getSamplesToHighlightAutosomalTrisomy.bexy function

<dl><dt>object</dt>
<dd>A bexy object.</dd>
<dt>ix</dt>
<dd>A list containing the index of a specific scaffold within z.</dd>
<dt>sampleNamesToHighlight</dt>
<dd>A vector of sample names that should be highlighted. If empty, samples are automatically highlighted based on the posterior probabilities.</dd></dl>

Arguments

Function to select samples that should be highlighted for autosomal trisomy — .getSamplesToHighlightAutosomalTrisomy.bexy

<dl>

<dt>object</dt>
<dd>A bexy object.</dd>


<dt>ix</dt>
<dd>A list containing the index of a specific scaffold within z.</dd>


<dt>sampleNamesToHighlight</dt>
<dd>A vector of sample names that should be highlighted. If empty, samples are automatically highlighted based on the posterior probabilities.</dd>

</dl>

.getSamplesToHighlightAutosomalTrisomy.bexy: Function to select samples that should be highlighted for autosomal trisomy

Description

Usage

Value

Arguments