bexy

Visualization of results produced by BeXY

Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (<https://bitbucket.org/wegmannlab/bexy>), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.

Madleina Caduff

Visualize and Parse the Output of 'BeXY'

Raphael Eckel

Christoph Leuenberger

Daniel Wegmann

bexy function

<dl><dt>path</dt>
<dd>The path where all the output files of BeXY are located. If NULL, the example files will be loaded.</dd>
<dt>readMCMCTrace</dt>
<dd>If TRUE, read the full trace of the MCMC of all parameters (potentially slow).</dd></dl>

Arguments

Accurate Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data — bexy

<dl>

<dt>path</dt>
<dd>The path where all the output files of BeXY are located. If NULL, the example files will be loaded.</dd>


<dt>readMCMCTrace</dt>
<dd>If TRUE, read the full trace of the MCMC of all parameters (potentially slow).</dd>

</dl>

bexy: Accurate Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data

Description

Usage

Value

Arguments