plotMCMCTrace

Plot the MCMC trace for a specific parameter

Provides functions for summarizing and plotting the output of the command-line tool 'BeXY' (<https://bitbucket.org/wegmannlab/bexy>), a tool that performs Bayesian inference of sex chromosome karyotypes and sex-linked scaffolds from low-depth sequencing data.

Madleina Caduff

bexy

Visualize and Parse the Output of 'BeXY'

Raphael Eckel

Christoph Leuenberger

Daniel Wegmann

plotMCMCTrace function

<dl><dt>object</dt>
<dd>A bexy object.</dd>
<dt>parameterName</dt>
<dd>The name of the parameter to plot (e.g. rho, logSigma, epsilon, s, t, a, f, ...)</dd>
<dt>maxNumPlots</dt>
<dd>The maximum number of plots to plot, default 20.</dd></dl>

Arguments

Plot the MCMC trace for a specific parameter — plotMCMCTrace

<dl>

<dt>object</dt>
<dd>A bexy object.</dd>


<dt>parameterName</dt>
<dd>The name of the parameter to plot (e.g. rho, logSigma, epsilon, s, t, a, f, ...)</dd>


<dt>maxNumPlots</dt>
<dd>The maximum number of plots to plot, default 20.</dd>

</dl>

plotMCMCTrace: Plot the MCMC trace for a specific parameter

Description

Usage

Value

Arguments

See Also

Examples