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bgsmtr (version 0.7)

Bayesian Group Sparse Multi-Task Regression

Description

Implementation of Bayesian multi-task regression models and was developed within the context of imaging genetics. The package can currently fit two models. The Bayesian group sparse multi-task regression model of Greenlaw et al. (2017) can be fit with implementation using Gibbs sampling. An extension of this model developed by Song, Ge et al. to accommodate both spatial correlation as well as correlation across brain hemispheres can also be fit using either mean-field variational Bayes or Gibbs sampling. The model can also be used more generally for multivariate (non-imaging) phenotypes with spatial correlation.

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Version

Install

install.packages('bgsmtr')

Monthly Downloads

256

Version

0.7

License

GPL-2

Maintainer

Yin Song

Last Published

December 13th, 2019

Functions in bgsmtr (0.7)

bgsmtr

Bayesian Group Sparse Multi-Task Regression for Imaging Genetics
sp_bgsmtr

A Bayesian Spatial Model for Imaging Genetics
bgsmtr_example_data

Example Structural Neuroimaging and Genetic Data
sp_bgsmtr_path

A Bayesian Spatial Model for Imaging Genetics
sp_bgsmtr_example_data

Example Structural Neuroimaging and Genetic Data for Spatial Model.