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bhmbasket (version 0.9.5)

Bayesian Hierarchical Models for Basket Trials

Description

Provides functions for the evaluation of basket trial designs with binary endpoints. Operating characteristics of a basket trial design are assessed by simulating trial data according to scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and assessing decision probabilities on stratum and trial-level based on Go / No-go decision making. The package is build for high flexibility regarding decision rules, number of interim analyses, number of strata, and recruitment. The BHMs proposed by Berry et al. (2013) and Neuenschwander et al. (2016) , as well as a model that combines both approaches are implemented. Functions are provided to implement Bayesian decision rules as for example proposed by Fisch et al. (2015) . In addition, posterior point estimates (mean/median) and credible intervals for response rates and some model parameters can be calculated. For simulated trial data, bias and mean squared errors of posterior point estimates for response rates can be provided.

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Version

Install

install.packages('bhmbasket')

Monthly Downloads

337

Version

0.9.5

License

GPL-3

Maintainer

Stephan Wojciekowski

Last Published

February 14th, 2022

Functions in bhmbasket (0.9.5)

getEstimates

getEstimates
createTrial

createTrial
getMuVar

getMuVar
getPriorParameters

getPriorParameters
scaleRoundList

scaleRoundList
setPriorParametersPooled

setPriorParametersPooled
setPriorParametersStratified

setPriorParametersStratified
setPriorParametersBerry

setPriorParametersBerry
loadScenarios

loadScenarios
logit

logit
negateGoDecisions

negateGoDecisions
performAnalyses

performAnalyses
saveScenarios

saveScenarios
saveAnalyses

saveAnalyses
setPriorParametersExNex

setPriorParametersExNex
simulateScenarios

simulateScenarios
setPriorParametersExNexAdj

setPriorParametersExNexAdj
loadAnalyses

loadAnalyses
getGoProbabilities

getGoProbabilities
invLogit

invLogit
getGoDecisions

getGoDecisions
combinePriorParameters

combinePriorParameters
continueRecruitment

continueRecruitment