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biclust (version 2.0.3)

BiCluster Algorithms

Description

The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) , plaid model (2005) , xmotifs (2003) and bimax (2006) . In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

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Version

Install

install.packages('biclust')

Monthly Downloads

2,857

Version

2.0.3

License

GPL-3

Maintainer

Sebastian Kaiser

Last Published

May 25th, 2021

Functions in biclust (2.0.3)

Biclust-class

The Biclust Class
BiclustMethod-class

The BiclustMethod Virtual Class
ChiaKaruturi

Chia and Karuturi Function
BCSpectral

The Spectral Bicluster algorithm
BCBimax

The Bimax Bicluster algorithm
BCPlaid

The Plaid Model Bicluster algorithm
binarize

Binarize
bubbleplot

Bubbleplot
biclust

The biclust Method
biclustbarchart

Bicluster Barchart
isoverlapp

Is Bicresult overlapping?
diagnosticPlot2

Diagnostics F Statistiics Visualization
diagnosticPlot

Diagnostic F Statistics Visualization
heatmapBC

Overlapping Heatmap
parallelCoordinates

Parallel Coordinates
bimax.grid

Parameter Grid for BCBimax Biclustering
plaid.grid

Parameter Grid for BCPlaid Biclustering
EisenYeast

Eisen Yeast
ensemble

Ensemble Methods for Bicluster Algorithms
bicluster

Extract Bilcuster
drawHeatmap

Draw Heatmap
BCXmotifs

The Xmotifs Bicluster algorithm
diagnosticTest

Testing Procedure for Bicluster Diagnostics
biclustmember

Bicluster Membership Graph
discretize

Create a discret matrix
writeBiclusterResults

writeBiclusterResults
computeObservedFstat

Diagnostic F Statistic Calculation
diagnoseColRow

Bootstrap Procedure for Bicluster Diagnostics
coherence

Coherence measures
plotclust

Barplot of Bicluster
predictBimax

Predict from a BCrepBimax Result
SyntrenEcoli

SynTReN E. coli
writeclust

Write a Bicluster as a Cluster Result
BCCC

The CC Bicluster algorithm
BicatYeast

BicAT Yeast
BCQuest

The Questmotif Bicluster algorithm
jaccardind

Jaccardind