biclust (version 2.0.3.1)

BCCC: The CC Bicluster algorithm

Description

Performs CC Biclustering based on the framework by Cheng and Church (2000). Searches for submatrices with a score lower than a specific treshold in a standardized data matrix.

Usage

# S4 method for matrix,BCCC
biclust(x, method=BCCC(), delta = 1.0, alpha=1.5, number=100)

Value

Returns an object of class Biclust.

Arguments

x

Data matrix.

method

Here BCCC, to perform CC algorithm

delta

Maximum of accepted score.

alpha

Scaling factor.

number

Number of bicluster to be found.

Author

Sebastian Kaiser

References

Cheng, Y. & Church, G.M. Biclustering of Expression Data Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000, 1, 93-103

See Also

biclust, Biclust

Examples

test <- matrix(rbinom(400, 50, 0.4), 20, 20)
res <- biclust(test, method=BCCC(), delta=1.5,  alpha=1, number=10)
res