bigMap (version 2.3.1)

bdm.wtt: Watertrack transform (WTT)

Description

Starts the WTT algorithm (third setp of the mapping protocol).

Usage

bdm.wtt(bdm, layer = 1)

Arguments

bdm

A bdm instance as generated by bdm.init().

layer

The number of the t-SNE layer (1 by default).

Value

A copy of the input bdm instance with bdm$wtt (WTT output). bdm$wtt[[layer]]$layer = 'NC' stands for not computed layers.

Details

This function requires the up-stream step bdm.pakde().

Examples

# NOT RUN {
# --- load mapped dataset
bdm.example()
# --- perform WTT
exMap <- bdm.wtt(exMap)
# --- plot WTT output
bdm.wtt.plot(exMap)
# }