bcnt.otu.OR

Benthic count data from western Oregon with operational taxonomic units
assigned by <code><a rd-options="" href="/link/get.otu?package=bio.infer&version=1.3-6" data-mini-rdoc="bio.infer::get.otu">get.otu</a></code>.

datasets

Imports benthic count data, reformats this data, and
computes environmental inferences from this data.

Lester L Yuan

bio.infer

Predict Environmental Conditions from Biological Observations

bcnt.otu.OR function

Five fields are included.<dl class="dl-horizontal">
 <dt><code>SVN</code></dt><dd>Unique sample identifier</dd>
 <dt><code>Taxon</code></dt><dd>Original taxon name, same as in <code><a rd-options="" href="/link/bcnt.OR?package=bio.infer&version=1.3-6" data-mini-rdoc="bio.infer::bcnt.OR">bcnt.OR</a></code></dd>
 <dt><code>CountValue</code></dt><dd>Taxon abundance</dd>
 <dt><code>TNAME</code></dt><dd>Taxon name after processing by
 <code><a rd-options="" href="/link/get.taxonomic?package=bio.infer&version=1.3-6" data-mini-rdoc="bio.infer::get.taxonomic">get.taxonomic</a></code></dd>
 <dt><code>OTU</code></dt><dd>Operational taxonomic unit. Taxon name selected with
 associated taxon-environment data and selected to eliminate
 double-counting</dd>
</dl>

Format

Benthic count data from western Oregon with operational taxonomic units
assigned by <code><a rd-options='' href='get.otu'>get.otu</a></code>.

Benthic count data with OTU — bcnt.otu.OR

Five fields are included.<dl class='dl-horizontal'>
 <dt><code>SVN</code></dt><dd>Unique sample identifier</dd>
 <dt><code>Taxon</code></dt><dd>Original taxon name, same as in <code><a rd-options='' href='bcnt.OR'>bcnt.OR</a></code></dd>
 <dt><code>CountValue</code></dt><dd>Taxon abundance</dd>
 <dt><code>TNAME</code></dt><dd>Taxon name after processing by
 <code><a rd-options='' href='get.taxonomic'>get.taxonomic</a></code></dd>
 <dt><code>OTU</code></dt><dd>Operational taxonomic unit. Taxon name selected with
 associated taxon-environment data and selected to eliminate
 double-counting</dd>
</dl>

bcnt.otu.OR: Benthic count data with OTU

Description

Usage

Arguments

Format

Examples