bio3d (version 2.3-0)

plot.hmmer: Plot a Summary of HMMER Hit Statistics.

Description

Produces a number of basic plots that should facilitate hit selection from the match statistics of a HMMER result.

Usage

"plot"(x, ...)

Arguments

x

HMMER results as obtained from the function hmmer.

...

arguments passed to plot.blast.

Value

Produces a plot on the active graphics device and returns a three component list object:

Details

See plot.blast for details.

References

Grant, B.J. et al. (2006) Bioinformatics 22, 2695--2696.

See Also

hmmer, blast.pdb

Examples

## Not run: 
# # HMMER server connection required - testing excluded
# 
# ##- PHMMER
# seq <- get.seq("2abl_A", outfile = tempfile())
# res <- hmmer(seq, db="pdb")
# plot.hmmer(res)
# 
# ## End(Not run)