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Bioassays

'Bioassays' is an R package, designed to provide a wide range of functions relevant to multi-well plate assays. It can handle data from any of the standard multi-well plate format: 6, 12, 24, 96 or 384 well plates. ‘Bioassays’ can help in formatting, visualizing and analyzing multi-well plate data. It has functions for handling outliers, for handling multiple data sets with separate blanks, for estimating values from standard curves, for summarizing data and for doing statistical analysis. Moreover, it is strongly documented in a manner designed to be easy for even beginners to grasp.

Installation

You can install the released version of bioassays from CRAN with:

install.packages("bioassays")

The latest development version can be installed from github with the remotes package

library(remotes)
install_github("anwarbio/bioassays")

Example

Detail’s of various funtions in this package is provided in ‘bioassays-vignette’. Examples on how to use this package is provided in ‘bioassays-example’ in Vignette.

Contribute

We love your input! Users may request new features by opening a GitHub Issue, or may contribute their own additions and improvements via a pull request. Similarly, if you run into problems while using this package, or require technical support, do not hesitate to request support through a GitHub Issue. If you use ‘Bioassays’ in your work and would like to further collaborate, I would be more than willing to discuss it over email or GitHub Issue.

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Version

Install

install.packages('bioassays')

Monthly Downloads

33

Version

1.0.1

License

GPL-3

Maintainer

Anwar Azad Palakkan

Last Published

October 9th, 2020

Functions in bioassays (1.0.1)

extract_filename

Extract Information From File Name
bioassays

Bioassays: A Package for Analyzing Multi Well Plate Bioassay's.
rawdata384

Rawdata of 384 well plate.
rawdata96

Rawdata of 96 well plate.
plate2df

Format Matrix Type 2D Data of Multi well Plate as Dataframe
reduceblank

Reduce Blank Values
data2plateformat

Renaming column and Row of Multiwell Data to Match Plate Format
rmodd_summary

Summarise a Numerical Vector with Control on Outlier Removal
plate_metadata

Combining Plate Specific Information with Metadata
metafile384

Metadata of 384 Well Plate
metafile96

Metadata of 96 Well Plate.
matrix96

Formatting Long Dataframe in to a Matrix Layout of Multi well Plate
pvalue

t-Test on Summary Dataframe
heatplate

Heatmap of multi well plate
rawdata24

Rawdata of 24 well plate.
data_DF1

Data of 96 well plate.
dfsummary

Summarize a Dataframe After Grouping Samples
estimate

Estimate Samples from Standard Curve