biocViews v1.40.1

Categorized views of R package repositories

structures for vocabularies and narratives of views

Functions in biocViews

Name Description
extractVignettes Extract pdf vignettes from local package repository
writePackageDetailHtml Write HTML files for packages in a CRAN-style repository
writeRepositoryHtml Write package descriptions and a repository index as HTML
writeRFilesFromVignettes Write R files from vignettes
genReposControlFiles Generate CRAN-style repository control files
writeTopLevelView Write the view for the root of a vocabulary to disk
recommendBiocViews Recommend biocViews for an existing Package.
PackageDetail-class Class "PackageDetail"
extractTopLevelFiles Extract files from the top level of source package tarballs
extractNEWS Extract NEWS files from source package tarballs
writeBiocViews Write a list of BiocView objects to HTML
writeHtmlDoc Write an XML DOM containing HTML to a file
getBiocSubViews Build a list of BiocView objects from a package repository
Htmlized-class Class "Htmlized"
getBiocViews Build a list of BiocView objects from a package repository
htmlValue HTML Representation of an Object
biocViews-package Categorized views of R package repositories
BiocView-class Class "BiocView"
getCurrentbiocViews Get a list of biocViews for each branch
getPackageNEWS Retrieve and print package NEWS
write_VIEWS Write a VIEWS control file for a CRAN-style package repository
write_SYMBOLS Write a SYMBOLS file
htmlFilename Return a filename for an object's HTML representation
htmlDoc Create a complete HTML document representation of an object
recommendPackages Recommend Packages using existing biocViews.
RepositoryDetail-class Class "RepositoryDetail"
biocViewsVocab Bioconductor Task Views Vocabulary Data
extractManuals Extract Rd man pages and build pdf reference manuals from local package repository
getPacksAndViews Parse VIEWS file for views and packages
validate_bioc_views Validate a package's biocViews.
getSubTerms Retrieve a term and its children from a vocab DAG
write_REPOSITORY Write a REPOSITORY control file for a CRAN-style package repository
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License Artistic-2.0
Collate AllClasses.R AllGenerics.R as-methods.R htmlDoc-methods.R htmlFilename-methods.R htmlValue-methods.R show-methods.R getPackNames.R packageDetails.R pump.R repository.R showvoc.R getPackageNEWS.R validation_tests.R recommendBiocViews.R
biocViews Infrastructure

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