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biofiles (version 1.0.0)

gbLocation-class: Class "gbLocation"

Description

“gbLocation” is an S4 class that provides a container for GenBank feature location descriptors.

Arguments

Slots

range

An integer matrix indicating the base numbers delimiting a sequence span.

fuzzy

A logical matrix indicating fuzzy start and/or end (e.g. <1..200).

strand

An integer vector containing -1, 1, or NA.

compound

A character code specifying how multiple ranges are joined. One of ‘join’, ‘order’, or ‘bond’.

accession

A character vector; the accession number of the sequence of the feature this location lives on.

remote

A logical vector

type

A character vector describing the type of the position. Normally an "R" for ‘range’ (e.g., 1..200 or point position 200), a "B" for ‘between bases’ (e.g., 36^37), or a "G" for gaps (e.g., gap(), gap(30), or gap(unk30)).

Details

For more information see the GenBank Release Note