biogrowth (version 0.2.0)

DynamicGrowth: DynamicGrowth class

Description

The DynamicGrowth class contains the results of a growth prediction under dynamic conditions. Its constructor is predict_dynamic_growth.

A subclass of list with items:

• simulation: A tibble with the model prediction

• gammas: A tibble with the value of each gamma factor for each value of times.

• env_conditions: A list of functions interpolating the environmental conditions.

• primary_pars: A list with the model parameters of the primary model.

• sec_models: A nested list defining the secondary models.

Usage

# S3 method for DynamicGrowth
plot(
  x,
  y = NULL,
  ...,
  add_factor = NULL,
  ylims = NULL,
  label_y1 = "logN",
  label_y2 = add_factor,
  line_col = "black",
  line_size = 1,
  line_type = "solid",
  line_col2 = "black",
  line_size2 = 1,
  line_type2 = "dashed"
)

Arguments

x

The object of class DynamicGrowth to plot.

y

ignored

...

additional arguments passed to plot.

add_factor

whether to plot also one environmental factor. If NULL (default), no environmental factor is plotted. If set to one character string that matches one entry of x$env_conditions, that condition is plotted in the secondary axis

ylims

A two dimensional vector with the limits of the primary y-axis.

label_y1

Label of the primary y-axis.

label_y2

Label of the secondary y-axis.

line_col

Aesthetic parameter to change the colour of the line geom in the plot, see: geom_line

line_size

Aesthetic parameter to change the thickness of the line geom in the plot, see: geom_line

line_type

Aesthetic parameter to change the type of the line geom in the plot, takes numbers (1-6) or strings ("solid") see: geom_line

line_col2

Same as lin_col, but for the environmental factor.

line_size2

Same as line_size, but for the environmental factor.

line_type2

Same as lin_type, but for the environmental factor.

Functions

• plot.DynamicGrowth: predicted growth curve under dynamic conditions.