DynamicGrowth: DynamicGrowth class

Description

The class DynamicGrowth has been superseded by the top-level class GrowthPrediction, which provides a unified approach for growth modelling.

Still, it is returned if the superseded predict_dynamic_growth() is called.

A subclass of list with items:

simulation: A tibble with the model prediction
gammas: A tibble with the value of each gamma factor for each value of times.
env_conditions: A list of functions interpolating the environmental conditions.
primary_pars: A list with the model parameters of the primary model.
sec_models: A nested list defining the secondary models.

Usage

# S3 method for DynamicGrowth
print(x, ...)
# S3 method for DynamicGrowth
plot(
  x,
  y = NULL,
  ...,
  add_factor = NULL,
  ylims = NULL,
  label_y1 = "logN",
  label_y2 = add_factor,
  line_col = "black",
  line_size = 1,
  line_type = "solid",
  line_col2 = "black",
  line_size2 = 1,
  line_type2 = "dashed",
  label_x = "time"
)
# S3 method for DynamicGrowth
coef(object, ...)

Arguments

x: The object of class DynamicGrowth to plot.
...: ignored
y: ignored
add_factor: whether to plot also one environmental factor. If NULL (default), no environmental factor is plotted. If set to one character string that matches one entry of x$env_conditions, that condition is plotted in the secondary axis
ylims: A two dimensional vector with the limits of the primary y-axis.
label_y1: Label of the primary y-axis.
label_y2: Label of the secondary y-axis.
line_col: Aesthetic parameter to change the colour of the line geom in the plot, see: ggplot2::geom_line()
line_size: Aesthetic parameter to change the thickness of the line geom in the plot, see: ggplot2::geom_line()
line_type: Aesthetic parameter to change the type of the line geom in the plot, takes numbers (1-6) or strings ("solid") see: ggplot2::geom_line()
line_col2: Same as lin_col, but for the environmental factor.
line_size2: Same as line_size, but for the environmental factor.
line_type2: Same as lin_type, but for the environmental factor.
label_x: Label of the x-axis.
object: an instance of DynamicGrowth

Methods (by generic)

print(DynamicGrowth): print of the model
plot(DynamicGrowth): predicted growth curve under dynamic conditions.
coef(DynamicGrowth): coefficients of the model