biogrowth (version 1.0.6)

get_dyna_residuals: Residuals of dynamic prediction

Description

Function for calculating residuals of a dynamic prediction according to the requirements of FME::modFit().

Usage

get_dyna_residuals(
  this_p,
  fit_data,
  env_conditions,
  known_pars,
  sec_model_names,
  cost = NULL,
  logbase_mu = logbase_logN,
  logbase_logN = 10
)

Value

An instance of FME::modCost().

Arguments

this_p

named vector of model parameters

fit_data

tibble with the data for the fit

env_conditions

tibble with the environmental conditions

known_pars

named vector of known model parameters

sec_model_names

named character vector with names the environmental conditions and values the secondary model (e.g. 'CPM').

cost

an instance of modCost to be combined (to fit multiple models).

logbase_mu

Base of the logarithm of the growthrate. By default, the same as logbase_logN. See vignette about units for details.

logbase_logN

Base of the logarithm for the population size. By default, 10 (i.e. log10). See vignette about units for details.