predict_stochastic_growth

<a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated"><img src="figures/lifecycle-deprecated.svg?package=biogrowth&version=1.0.6" alt="[Deprecated]"></a>
<code>predict_stochastic_growth()</code> was renamed <code>predict_growth_uncertainty()</code> because
the original function name may be misleading, as this is not a stochastic
differential equation

Modelling of population growth under static and dynamic environmental conditions.
Includes functions for model fitting and making prediction under isothermal and
dynamic conditions. The methods (algorithms & models) are based on
predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).

Alberto Garre

biogrowth

Modelling of Population Growth

Jeroen Koomen

Heidy den Besten

Marcel Zwietering

predict_stochastic_growth function

<dl><dt>model_name</dt>
<dd>Character describing the primary growth model.</dd>
<dt>times</dt>
<dd>Numeric vector of storage times for the simulations.</dd>
<dt>n_sims</dt>
<dd>Number of simulations.</dd>
<dt>pars</dt>
<dd>A tibble describing the parameter uncertainty (see details).</dd>
<dt>corr_matrix</dt>
<dd>Correlation matrix of the model parameters. Defined in the
same order as in <code>pars</code>. An identity matrix by default
(uncorrelated parameters).</dd>
<dt>check</dt>
<dd>Whether to do some tests. <code>FALSE</code> by default.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#deprecated'><img src='figures/lifecycle-deprecated.svg' alt='[Deprecated]' /></a>
<code>predict_stochastic_growth()</code> was renamed <code>predict_growth_uncertainty()</code> because
the original function name may be misleading, as this is not a stochastic
differential equation

Deprecated isothermal growth with parameter uncertainty — predict_stochastic_growth

<dl>

<dt>model_name</dt>
<dd>Character describing the primary growth model.</dd>


<dt>times</dt>
<dd>Numeric vector of storage times for the simulations.</dd>


<dt>n_sims</dt>
<dd>Number of simulations.</dd>


<dt>pars</dt>
<dd>A tibble describing the parameter uncertainty (see details).</dd>


<dt>corr_matrix</dt>
<dd>Correlation matrix of the model parameters. Defined in the
same order as in <code>pars</code>. An identity matrix by default
(uncorrelated parameters).</dd>


<dt>check</dt>
<dd>Whether to do some tests. <code>FALSE</code> by default.</dd>

</dl>

predict_stochastic_growth: Deprecated isothermal growth with parameter uncertainty

Description

Usage

Arguments