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biom (version 0.3.11)

An interface package (beta) for the BIOM file format.

Description

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

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Install

install.packages('biom')

Monthly Downloads

8

Version

0.3.11

License

GPL-2

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Maintainer

Paul McMurdie

Last Published

December 13th, 2013

Functions in biom (0.3.11)

show

Method extensions to show for biom objects.
nrow

sample_metadata

biom_data

biom_shape

colnames

read_biom

Read a biom-format file, returning a biom-class.
ncol

matrix_element_type

observation_metadata

rownames

write_biom

Write a biom-format file, returning a biom-class.
biom-package

This is an R package for interfacing with the biom format.
header

biom-class

The biom format data class.
biom

Build and return an instance of the biom-class.