This function reads an organism specific proteome stored in a defined file format.
read_proteome(file, format = "fasta", obj.type = "Biostrings", ...)Either a Biostrings or data.table object.
a character string specifying the path to the file storing the proteome.
a character string specifying the file format used to store the
genome, e.g. format = "fasta" (default) or format = "gbk".
a character string specifying the object stype in which the
genomic sequence shall be represented.
Either as obj.type = "Biostrings" (default) or as
obj.type = "data.table".
additional arguments that are used by
read.fasta.
Hajk-Georg Drost
This function takes a string specifying the path to the proteome file of interest as first argument.
It is possible to read in different proteome file standards such as fasta or genebank.
Other readers:
read_cds(),
read_genome(),
read_gff(),
read_rna()
Other proteome:
getProteomeSet(),
getProteome()