⚠️There's a newer version (1.0.7) of this package.Take me there.

biomartr (version 0.0.1)

Biological Data Retrieval with R

Description

Performing biological data retrieval and functional annotation with R.

Copy Link

Version

Install

install.packages('biomartr')

Monthly Downloads

1,407

Version

0.0.1

License

GPL-3

Maintainer

HajkGeorg Drost

Last Published

July 22nd, 2015

Functions in biomartr (0.0.1)

organismFilters

Retrieve Biomart Filters for an Organism

organismBM

Retrieve Biomart Marts and Datasets for an Organism

getProteome

Proteome Retrieval

getCDS

Coding Sequence Retrieval

organismAttributes

Retrieve Biomart Attributes for an Organism

is.genome.available

Check Genome Availability

getGenome

Genome Retrieval

refseqOrganisms

Retrieve All Organism Names Stored on refseq

getFilters

Retrieve All Available Filters for a Specific Dataset

getMarts

Retrieve All Available BioMart Databases

download_database

Download a Database to Your Local Hard Drive

read_cds

Read the CDS of a given Organism

getDatasets

Retrieve All Available Datasets for a BioMart Database

listGenomes

List All Available Genomes

getGO

Gene Ontology Query

read_genome

Read the genome of a given Organism

listDatabases

Retrieve a List of Available Databases for Download

biomart

Main BioMart Query Function

getAttributes

Retrieve All Available Attributes for a Specific Dataset

read_proteome

Read the proteome of a given Organism