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biomartr (version 0.0.1)
Biological Data Retrieval with R
Description
Performing biological data retrieval and functional annotation with R.
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Install
install.packages('biomartr')
Monthly Downloads
1,920
Version
0.0.1
License
GPL-3
Maintainer
HajkGeorg Drost
Last Published
July 22nd, 2015
Functions in biomartr (0.0.1)
Search functions
organismFilters
Retrieve Biomart Filters for an Organism
organismBM
Retrieve Biomart Marts and Datasets for an Organism
getProteome
Proteome Retrieval
getCDS
Coding Sequence Retrieval
organismAttributes
Retrieve Biomart Attributes for an Organism
is.genome.available
Check Genome Availability
getGenome
Genome Retrieval
refseqOrganisms
Retrieve All Organism Names Stored on refseq
getFilters
Retrieve All Available Filters for a Specific Dataset
getMarts
Retrieve All Available BioMart Databases
download_database
Download a Database to Your Local Hard Drive
read_cds
Read the CDS of a given Organism
getDatasets
Retrieve All Available Datasets for a BioMart Database
listGenomes
List All Available Genomes
getGO
Gene Ontology Query
read_genome
Read the genome of a given Organism
listDatabases
Retrieve a List of Available Databases for Download
biomart
Main BioMart Query Function
getAttributes
Retrieve All Available Attributes for a Specific Dataset
read_proteome
Read the proteome of a given Organism