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biomartr (version 0.0.2)

Functional Annotation and Biological Data Retrieval with R

Description

Performing biological data retrieval and functional annotation with R.

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Version

Install

install.packages('biomartr')

Monthly Downloads

1,564

Version

0.0.2

License

GPL-3

Issues

8

Pull Requests

0

Stars

222

Forks

28

Maintainer

HajkGeorg Drost

Last Published

August 7th, 2015

Functions in biomartr (0.0.2)

biomart

Main BioMart Query Function
is.genome.available

Check Genome Availability
listGenomes

List All Available Genomes
organismAttributes

Retrieve Biomart Attributes for an Organism
getDatasets

Retrieve All Available Datasets for a BioMart Database
getGenome

Genome Retrieval
download_database

Download a Database to Your Local Hard Drive
getAttributes

Retrieve All Available Attributes for a Specific Dataset
getFilters

Retrieve All Available Filters for a Specific Dataset
getCDS

Coding Sequence Retrieval
organismFilters

Retrieve Biomart Filters for an Organism
getMarts

Retrieve All Available BioMart Databases
read_proteome

Read the proteome of a given Organism
organismBM

Retrieve Biomart Marts and Datasets for an Organism
listDatabases

Retrieve a List of Available Databases for Download
getGO

Gene Ontology Query
read_cds

Read the CDS of a given Organism
refseqOrganisms

Retrieve All Organism Names Stored on refseq
getProteome

Proteome Retrieval
read_genome

Read the genome of a given Organism