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biomartr (version 0.0.2)
Functional Annotation and Biological Data Retrieval with R
Description
Performing biological data retrieval and functional annotation with R.
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Install
install.packages('biomartr')
Monthly Downloads
1,920
Version
0.0.2
License
GPL-3
Issues
10
Pull Requests
0
Stars
205
Forks
29
Repository
https://github.com/HajkD/biomartr
Maintainer
HajkGeorg Drost
Last Published
August 7th, 2015
Functions in biomartr (0.0.2)
Search functions
biomart
Main BioMart Query Function
is.genome.available
Check Genome Availability
listGenomes
List All Available Genomes
organismAttributes
Retrieve Biomart Attributes for an Organism
getDatasets
Retrieve All Available Datasets for a BioMart Database
getGenome
Genome Retrieval
download_database
Download a Database to Your Local Hard Drive
getAttributes
Retrieve All Available Attributes for a Specific Dataset
getFilters
Retrieve All Available Filters for a Specific Dataset
getCDS
Coding Sequence Retrieval
organismFilters
Retrieve Biomart Filters for an Organism
getMarts
Retrieve All Available BioMart Databases
read_proteome
Read the proteome of a given Organism
organismBM
Retrieve Biomart Marts and Datasets for an Organism
listDatabases
Retrieve a List of Available Databases for Download
getGO
Gene Ontology Query
read_cds
Read the CDS of a given Organism
refseqOrganisms
Retrieve All Organism Names Stored on refseq
getProteome
Proteome Retrieval
read_genome
Read the genome of a given Organism