biomartr (version 0.5.1)

getGroups: Retrieve available groups for a kingdom of life

Description

A short list of available groups for a kingdom of life.

Usage

getGroups(kingdom, db = "refseq")

Arguments

kingdom

a character string specifying for which kingdom of life groups shall be retrieved. See getKingdoms for details.

db

a character string specifying the database from which the genome shall be retrieved: db = "refseq", db = "genbank". Default is db = "refseq".

See Also

meta.retrieval, getGenome, getProteome, getCDS, getKingdoms

Examples

# get possible kigdom names
getKingdoms(db = "refseq")
## Not run: ------------------------------------
# # retrieve subgroups for vertebrate_mammalian available from refseq
# getGroups(kingdom = "vertebrate_mammalian", db = "refseq")
# 
# # get possible kigdom names
# getKingdoms(db = "genbank")
# # retrieve subgroups for vertebrate_mammalian available from genbank
# getGroups(kingdom = "vertebrate_mammalian",db = "genbank")
## ---------------------------------------------