biomartr (version 0.5.1)

listGroups: List number of available genomes in each group

Description

Users can retrieve the available number of sequenced genomes per group. Only available for db = "refseq" and db = "genbank".

Usage

listGroups(db = "refseq", kingdom = "all", details = FALSE)

Arguments

db

a character string specifying the database for which genome availability shall be checked, e.g. db = "refseq" and db = "genbank".

kingdom

a kingdom specification retrieved by getKingdoms.

details

shall all species corresponding to the specified kingdom be returned? Default is details = FALSE.

See Also

listGenomes, is.genome.available, listKingdoms

Examples

## Not run: ------------------------------------
# # example for refseq
# listGroups(db = "refseq")
# # example for genbank
# listGroups(db = "genbank")
# ### in case groups should be specified by kingdom
# # first, retrieve available kingdom names
# listKingdoms()
# # now we choose kingdom "bacteria"
# listGroups(db = "refseq", kingdom = "bacteria")
# # or
# listGroups(db = "genbank", kingdom = "bacteria")
## ---------------------------------------------