biomartr (version 0.5.9000)

getGroups: Retrieve available groups for a kingdom of life

Description

A short list of available groups for a kingdom of life.

Usage

getGroups(kingdom, db = "refseq")

Arguments

kingdom

a character string specifying for which kingdom of life groups shall be retrieved. See getKingdoms for details.

db

a character string specifying the database from which the genome shall be retrieved: db = "refseq", db = "genbank". Default is db = "refseq".

See Also

meta.retrieval, getGenome, getProteome, getCDS, getKingdoms

Examples

# NOT RUN {
# get possible kigdom names
getKingdoms(db = "refseq")
# }
# NOT RUN {
# retrieve subgroups for vertebrate_mammalian available from refseq
getGroups(kingdom = "vertebrate_mammalian", db = "refseq")

# get possible kigdom names
getKingdoms(db = "genbank")
# retrieve subgroups for vertebrate_mammalian available from genbank
getGroups(kingdom = "vertebrate_mammalian",db = "genbank")
# }