This function reads an organism specific RNA stored in a defined file format.
read_rna(file, format = "fasta", obj.type = "Biostrings", ...)A data.table storing the gene id in the first column and the corresponding sequence as string in the second column.
a character string specifying the path to the file storing the RNA.
a character string specifying the file format used to store the
genome, e.g. format = "fasta" (default) or format = "gbk".
a character string specifying the object stype in which the
genomic sequence shall be represented.
Either as obj.type = "Biostrings" (default) or
as obj.type = "data.table".
additional arguments that are used by
read.fasta.
Hajk-Georg Drost
This function takes a string specifying the path to the RNA file of interest as first argument. It is possible to read in different proteome file standards such as fasta or genebank.
Other rna:
getRNASet(),
getRNA()
Other readers:
read_cds(),
read_genome(),
read_gff(),
read_proteome()