BIOMOD.EnsembleModeling.out-class

BIOMOD.EnsembleModeling.out

show,BIOMOD.EnsembleModeling.out-method

a BIOMOD.EnsembleModeling.out object

object

EnsembleModeling objects are created, used and returned by BIOMOD
functions. It's contains information relative to an biomod2
ensemble modeling procedure.
- output of: <code>BIOMOD_EnsembleModeling</code>
- input of: <code>BIOMOD_EnsembleForecasting</code>

models

ensemble

Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.

Damien Georges

biomod2

Ensemble Platform for Species Distribution Modeling

BIOMOD.EnsembleModeling.out-class function

<dl><dt>object</dt>
<dd>a BIOMOD.EnsembleModeling.out object</dd></dl>

Arguments

<dl>
<dt><code>sp.name</code></dt>
<dd>"character", species name</dd></dl>
<dt><code>expl.var.names</code></dt>
<dd>"character", explanatory variables
names</dd>
<dt><code>models.out.obj</code></dt>
<dd>"BIOMOD.stored.models.out", object which
contains information on individuals models that have been combined</dd>
<dt><code>eval.metric</code></dt>
<dd>"character", evaluation metrics chose for
models selection</dd>
<dt><code>eval.metric.quality.threshold</code></dt>
<dd>"numeric", thresholds
defined for models selection</dd>
<dt><code>em.computed</code></dt>
<dd>"character", ensemble models built names</dd>
<dt><code>em.by</code></dt>
<dd>"character", way models are combined</dd>
<dt><code>em.models</code></dt>
<dd>"ANY", list of built biomod2.ensemble.models
objects</dd>
<dt><code>modeling.id</code></dt>
<dd>"character", the id of the whole
modelling process</dd>
<dt><code>link</code></dt>
<dd>"character", the path to corresponding hard drive
saved object</dd>

Slots

Author

BIOMOD_EnsembleModeling() outputs objects class — BIOMOD.EnsembleModeling.out-class

<dl>

<dt>object</dt>
<dd>a BIOMOD.EnsembleModeling.out object</dd>

</dl>

<dl>
<dt><code>sp.name</code></dt>
<dd>"character", species name</dd>


<dt><code>expl.var.names</code></dt>
<dd>"character", explanatory variables
names</dd>


<dt><code>models.out.obj</code></dt>
<dd>"BIOMOD.stored.models.out", object which
contains information on individuals models that have been combined</dd>


<dt><code>eval.metric</code></dt>
<dd>"character", evaluation metrics chose for
models selection</dd>


<dt><code>eval.metric.quality.threshold</code></dt>
<dd>"numeric", thresholds
defined for models selection</dd>


<dt><code>em.computed</code></dt>
<dd>"character", ensemble models built names</dd>


<dt><code>em.by</code></dt>
<dd>"character", way models are combined</dd>


<dt><code>em.models</code></dt>
<dd>"ANY", list of built biomod2.ensemble.models
objects</dd>


<dt><code>modeling.id</code></dt>
<dd>"character", the id of the whole
modelling process</dd>


<dt><code>link</code></dt>
<dd>"character", the path to corresponding hard drive
saved object</dd>


</dl>

BIOMOD.EnsembleModeling.out-class: BIOMOD_EnsembleModeling() outputs objects class

Description

Usage

Arguments

Slots

Author

See Also

Examples