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biomod2 (version 4.1-2)

predict2.bm: Functions to get predictions from biomod2_model objects

Description

Internal S4 method used to predict single models from biomod2_model on (new) explanatory variables. predict2 was introduced to allow a signature with two arguments : object, a type of biomod2_model and newdata, either a RasterStack or a data.frame.

Usage

predict2(object, newdata, ...)
# S4 method for biomod2_model,RasterStack
predict2(object, newdata, predfun, seedval = NULL, use_calc = FALSE, ...)
# S4 method for biomod2_model,data.frame
predict2(object, newdata, predfun, seedval = NULL, ...)
# S4 method for ANN_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for ANN_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for CTA_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for CTA_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for FDA_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for FDA_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for GAM_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for GAM_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for GBM_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for GBM_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for GLM_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for GLM_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for MARS_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for MARS_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for MAXENT.Phillips_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for MAXENT.Phillips_biomod2_model,data.frame
predict2(object, newdata, do_raster = FALSE, newraster = NULL, ...)
# S4 method for MAXENT.Phillips.2_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for MAXENT.Phillips.2_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for RF_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for RF_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for SRE_biomod2_model,RasterStack
predict2(object, newdata, ...)
# S4 method for SRE_biomod2_model,data.frame
predict2(object, newdata, ...)

Arguments

object

a biomod2_model object

newdata

a data.frame or RasterStack object containing data for new predictions

predfun

a function, generated by the predict2 method specific to each biomod2_model subclass and used within the generic predict2.biomod2_model.RasterStack or predict2.biomod2_model.data.frame to do the prediction

seedval

(optional, default NULL)
An integer value corresponding to the new seed value to be set

use_calc

(optional, default FALSE). A boolean used for the RasterStack methods, when predict.RasterStack cannot be used and calc must be used instead.

do_raster

(optional, default NULL). A boolean used with MAXENT.Phillips, so that the RasterStack method can use the data.frame method.

newraster

(optional, default NULL). A raster used by the MAXENT.Phillips method so that the data.frame method can transform its results back into RasterStack when do_raster = TRUE.

...

(optional))

Author

Remi Patin

See Also

biomod2_model

Other Toolbox functions: getters.bm, getters.out, load_stored_object(), predict.bm, predict.em, predict2.em