BIOMOD.models.options

BIOMOD.models.options-class

show,BIOMOD.models.options-method

Class returned by <code>BIOMOD_ModelingOptions</code>, and used by 
<code>BIOMOD_Tuning</code> and <code>BIOMOD_Modeling</code>

Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.

Maya Gueguen

biomod2

Ensemble Platform for Species Distribution Modeling

Wilfried Thuiller

Damien Georges

Robin Engler

Frank Breiner

Bruno Lafourcade

Remi Patin

BIOMOD.models.options function

<dl><dt>object</dt>
<dd>a <code>BIOMOD.models.options</code> object</dd></dl>

Arguments

<dl>
<dt><code>GLM</code></dt>
<dd>a <code>list</code> containing GLM options</dd></dl>
<dt><code>GBM</code></dt>
<dd>a <code>list</code> containing GBM options</dd>
<dt><code>GAM</code></dt>
<dd>a <code>list</code> containing GAM options</dd>
<dt><code>CTA</code></dt>
<dd>a <code>list</code> containing CTA options</dd>
<dt><code>ANN</code></dt>
<dd>a <code>list</code> containing ANN options</dd>
<dt><code>SRE</code></dt>
<dd>a <code>list</code> containing SRE options</dd>
<dt><code>FDA</code></dt>
<dd>a <code>list</code> containing FDA options</dd>
<dt><code>MARS</code></dt>
<dd>a <code>list</code> containing MARS options</dd>
<dt><code>RF</code></dt>
<dd>a <code>list</code> containing RF options</dd>
<dt><code>MAXENT</code></dt>
<dd>a <code>list</code> containing MAXENT options</dd>
<dt><code>MAXNET</code></dt>
<dd>a <code>list</code> containing MAXNET options</dd>
<dt><code>XGBOOST</code></dt>
<dd>a <code>list</code> containing XGBOOST options</dd>

Slots

Author

BIOMOD_ModelingOptions() output object class — BIOMOD.models.options

<dl>

<dt>object</dt>
<dd>a <code>BIOMOD.models.options</code> object</dd>

</dl>

<dl>
<dt><code>GLM</code></dt>
<dd>a <code>list</code> containing GLM options</dd>


<dt><code>GBM</code></dt>
<dd>a <code>list</code> containing GBM options</dd>


<dt><code>GAM</code></dt>
<dd>a <code>list</code> containing GAM options</dd>


<dt><code>CTA</code></dt>
<dd>a <code>list</code> containing CTA options</dd>


<dt><code>ANN</code></dt>
<dd>a <code>list</code> containing ANN options</dd>


<dt><code>SRE</code></dt>
<dd>a <code>list</code> containing SRE options</dd>


<dt><code>FDA</code></dt>
<dd>a <code>list</code> containing FDA options</dd>


<dt><code>MARS</code></dt>
<dd>a <code>list</code> containing MARS options</dd>


<dt><code>RF</code></dt>
<dd>a <code>list</code> containing RF options</dd>


<dt><code>MAXENT</code></dt>
<dd>a <code>list</code> containing MAXENT options</dd>


<dt><code>MAXNET</code></dt>
<dd>a <code>list</code> containing MAXNET options</dd>


<dt><code>XGBOOST</code></dt>
<dd>a <code>list</code> containing XGBOOST options</dd>


</dl>

BIOMOD.models.options: `BIOMOD_ModelingOptions()` output object class

Description

Usage

Arguments

Slots

Author

See Also

Examples