biomod2 (version 4.2-4)

biomod2-deprecated: Deprecated functions in package biomod2.

Description

The functions listed below are deprecated and were removed in the current version. When possible, alternative functions with similar functionality are mentioned. Help pages for deprecated functions are available at help("<function>-deprecated").

Usage

BIOMOD_ConvertOldRun(...)
BIOMOD_cv(...)
BIOMOD_CrossValidation(...)
BIOMOD_presenceonly(...)
BIOMOD_tuning(...)
BinaryTransformation(...)
calculate.stat(...)
CustomIndexMaker(...)
FilteringTransformation(...)
Find.Optim.Stat(...)
getStatOptimValue(...)
makeFormula(...)
models_scores_graph(...)
Print_Default_ModelingOptions(...)
ProbDensFunc(...)
response.plot(...)
response.plot2(...)
sample.factor.levels(...)
sre(...)
.transform.outputs.array(...)
.transform.outputs.list(...)
update_objects(...)
variables_importance(...)

<code>BIOMOD_ConvertOldRun</code>

BIOMOD_ConvertOldRun was removed in biomod2 version 4.0.

<code>BIOMOD_cv</code>

For BIOMOD_cv use BIOMOD_CrossValidation.

<code>BIOMOD_CrossValidation</code>

For BIOMOD_CrossValidation use bm_CrossValidation.

<code>BIOMOD_presenceonly</code>

For BIOMOD_presenceonly use BIOMOD_PresenceOnly.

<code>BIOMOD_tuning</code>

For BIOMOD_tuning use BIOMOD_Tuning.

<code>BinaryTransformation</code>

For BinaryTransformation use bm_BinaryTransformation.

<code>calculate.stat</code>

For calculate.stat use bm_CalculateStat.

<code>CustomIndexMaker</code>

CustomIndexMaker was removed in biomod2 version 4.0.

<code>FilteringTransformation</code>

For FilteringTransformation use BinaryTransformation.

<code>Find.Optim.Stat</code>

For Find.Optim.Stat use bm_FindOptimStat.

<code>getStatOptimValue</code>

For getStatOptimValue use get_optim_value.

<code>makeFormula</code>

For makeFormula use bm_MakeFormula.

<code>models_scores_graph</code>

For models_scores_graph use bm_PlotEvalMean.

<code>Print_Default_ModelingOptions</code>

For Print_Default_ModelingOptions use bm_DefaultModelingOptions.

<code>ProbDensFunc</code>

For ProbDensFunc use bm_PlotRangeSize.

<code>response.plot</code>

For response.plot use bm_PlotResponseCurves.

<code>response.plot2</code>

For response.plot2 use bm_PlotResponseCurves.

<code>sample.factor.levels</code>

For sample.factor.levels use bm_SampleFactorLevels.

<code>sre</code>

For sre use bm_SRE.

<code>.transform.outputs.array</code>

.transform.outputs.array was removed in biomod2 version 4.0.

<code>.transform.outputs.list</code>

For .transform.outputs.list use .transform_outputs_list.

<code>update_objects</code>

update_objects was removed in biomod2 version 4.0.

<code>variables_importance</code>

For variables_importance use bm_VariablesImportance.