biomod2 (version 4.2-4)

predict2.em: Functions to get predictions from biomod2_ensemble_model objects

Description

This function allows the user to predict single models from biomod2_ensemble_model on (new) explanatory variables.

Usage

# S4 method for biomod2_ensemble_model,SpatRaster
predict2(object, newdata, predfun, seedval = NULL, ...)
# S4 method for biomod2_ensemble_model,data.frame
predict2(object, newdata, predfun, seedval = NULL, ...)
# S4 method for EMmean_biomod2_model,SpatRaster
predict2(object, newdata, ...)
# S4 method for EMmean_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for EMmedian_biomod2_model,SpatRaster
predict2(object, newdata, ...)
# S4 method for EMmedian_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for EMcv_biomod2_model,SpatRaster
predict2(object, newdata, ...)
# S4 method for EMcv_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for EMci_biomod2_model,SpatRaster
predict2(object, newdata, ...)
# S4 method for EMci_biomod2_model,data.frame
predict2(object, newdata, ...)
# S4 method for EMca_biomod2_model,SpatRaster
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)
# S4 method for EMca_biomod2_model,data.frame
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)
# S4 method for EMwmean_biomod2_model,SpatRaster
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)
# S4 method for EMwmean_biomod2_model,data.frame
predict2(object, newdata, data_as_formal_predictions = FALSE, ...)

Arguments

object

a biomod2_ensemble_model object

newdata

a data.frame or SpatRaster object containing data for new predictions

predfun

a function, generated by the predict2 method specific to each biomod2_model subclass and used within the generic predict2.biomod2_model.SpatRaster or predict2.biomod2_model.data.frame to do the prediction

seedval

(optional, default NULL)
An integer value corresponding to the new seed value to be set

data_as_formal_predictions

(optional, default FALSE). A boolean describing whether newdata is given as raw environmental data (FALSE) or as formal predictions of the individual models used to build the ensemble model (TRUE).

na.rm

(optional, default TRUE)
A boolean defining whether Ensemble Model projection should ignore NA in Individual Model projection. Argument ignored by EWmean ensemble algorithm.

...

(optional)

Author

Remi Patin

See Also

biomod2_ensemble_model

Other Toolbox functions: getters.bm, getters.out, load_stored_object(), predict.bm, predict.em, predict2.bm