bioregion (version 1.3.0)

betapart_to_bioregion: Convert betapart dissimilarity to bioregion dissimilarity (DEPRECATED)

Description

This function converts dissimilarity results produced by the betapart package (and packages using betapart, such as phyloregion) into a dissimilarity object compatible with the bioregion package. This function only converts object types to make them compatible with bioregion; it does not modify the beta-diversity values. This function allows the inclusion of phylogenetic beta diversity to compute bioregions with bioregion.

Usage

betapart_to_bioregion(betapart_result)

Value

A dissimilarity object of class bioregion.pairwise, compatible with the bioregion package.

Arguments

betapart_result

An object produced by the betapart package (e.g., using the beta.pair function).

Author

Boris Leroy ()
Maxime Lenormand ()
Pierre Denelle ()

See Also

This function is deprecated, use as_bioregion_pairwise instead.

Examples

comat <- matrix(sample(0:1000, size = 50, replace = TRUE,
prob = 1 / 1:1001), 5, 10)
rownames(comat) <- paste0("Site", 1:5)
colnames(comat) <- paste0("Species", 1:10)

if (FALSE) {
beta_div <- betapart::beta.pair.abund(comat)
betapart_to_bioregion(beta_div)
}