bioseq (version 0.1.1)

seq_extract_position: Extract a region between two positions in sequences

Description

Extract a region between two positions in sequences

Usage

seq_extract_position(x, position_in, position_out)

Arguments

x

a DNA, RNA or AA vector.

position_in

an integer giving the position where to start to extract.

position_out

an integer giving the position where to stop to extract.

Value

A vector of same class as x.

See Also

stri_extract from stringi and str_extract from stringr for the underlying implementation.

Other string operations: seq-replace, seq_combine, seq_count_pattern, seq_crop_pattern, seq_crop_position, seq_detect_pattern, seq_extract_pattern, seq_remove_pattern, seq_remove_position, seq_replace_position, seq_split_kmer, seq_split_pattern

Examples

# NOT RUN {
x <- dna("ACGTTAGTGTAGCCGT", "CTCGAAATGA")
seq_extract_position(x, 3, 8)

# }