as_DNAbin.tbl_df

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences).
Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>.
Provides a collection of functions to perform biological conversion among classes
(transcription, translation) and basic operations on sequences
(detection, selection and replacement based on positions or patterns).
The package also provides functions to import and export sequences from and to other package formats.

Francois Keck

bioseq

A Toolbox for Manipulating Biological Sequences

as_DNAbin.tbl_df function

<dl><dt>x</dt>
<dd>a tibble.</dd>
<dt>sequences</dt>
<dd>Name of the tibble column that stores the sequences.</dd>
<dt>labels</dt>
<dd>Name of the tibble column that stores the sequence labels.</dd>
<dt>...</dt>
<dd>Other params.</dd></dl>

Arguments

Coerce tibble to DNAbin — as_DNAbin.tbl_df

<dl>

<dt>x</dt>
<dd>a tibble.</dd>


<dt>sequences</dt>
<dd>Name of the tibble column that stores the sequences.</dd>


<dt>labels</dt>
<dd>Name of the tibble column that stores the sequence labels.</dd>


<dt>...</dt>
<dd>Other params.</dd>

</dl>

as_DNAbin.tbl_df: Coerce tibble to DNAbin

Description

Usage

Value

Arguments