read_fasta

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences).
Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>.
Provides a collection of functions to perform biological conversion among classes
(transcription, translation) and basic operations on sequences
(detection, selection and replacement based on positions or patterns).
The package also provides functions to import and export sequences from and to other package formats.

Francois Keck

bioseq

A Toolbox for Manipulating Biological Sequences

read_fasta function

<dl><dt>file</dt>
<dd>A path to a file, a connection or a character string.</dd>
<dt>type</dt>
<dd>Type of data. Can be "DNA" (the default), "RNA" or "AA".</dd></dl>

Arguments

Read sequences in FASTA format — read_fasta

<dl>

<dt>file</dt>
<dd>A path to a file, a connection or a character string.</dd>


<dt>type</dt>
<dd>Type of data. Can be "DNA" (the default), "RNA" or "AA".</dd>

</dl>

read_fasta: Read sequences in FASTA format

Description

Usage

Value

Arguments

See Also