seq_extract_position

Extract a region between two positions in sequences

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences).
Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>.
Provides a collection of functions to perform biological conversion among classes
(transcription, translation) and basic operations on sequences
(detection, selection and replacement based on positions or patterns).
The package also provides functions to import and export sequences from and to other package formats.

Francois Keck

bioseq

A Toolbox for Manipulating Biological Sequences

seq_extract_position function

<dl><dt>x</dt>
<dd>a DNA, RNA or AA vector.</dd>
<dt>position_in</dt>
<dd>an integer giving the position where to start to extract.</dd>
<dt>position_out</dt>
<dd>an integer giving the position where to stop to extract.</dd></dl>

Arguments

Extract a region between two positions in sequences — seq_extract_position

<dl>

<dt>x</dt>
<dd>a DNA, RNA or AA vector.</dd>


<dt>position_in</dt>
<dd>an integer giving the position where to start to extract.</dd>


<dt>position_out</dt>
<dd>an integer giving the position where to stop to extract.</dd>

</dl>

seq_extract_position: Extract a region between two positions in sequences

Description

Usage

Value

Arguments

See Also

Examples