biosigner (version 1.0.6)

show.biosign: Show method for 'biosign' signature objects

Description

Prints the selected features and the accuracies of the classifiers.

Usage

"show"(object)

Arguments

object

An S4 object of class biosign, created by the biosign function.

Value

Invisible.

Examples

## loading the diaplasma dataset

data(diaplasma)
attach(diaplasma)

## restricting to a smaller dataset for this example

featureSelVl <- variableMetadata[, "mzmed"] >= 490 & variableMetadata[, "mzmed"] < 500
dataMatrix <- dataMatrix[, featureSelVl]
variableMetadata <- variableMetadata[featureSelVl, ]

## signature selection for all 3 classifiers
## a bootI = 5 number of bootstraps is used for this example
## we recommend to keep the default bootI = 50 value for your analyzes

set.seed(123)
diaSign <- biosign(dataMatrix, sampleMetadata[, "type"], bootI = 5)

diaSign

detach(diaplasma)